Supplementary data for the manuscript (Bmh) proteins inhibit transcription activation by Adr1 through direct binding to its regulatory domain
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1 Supplementary data for the manuscript (Bmh) proteins inhibit transcription activation by Adr1 through direct binding to its regulatory domain P. K. Parua, S. Ratnakumar, K. Braun, K.M. Dombek, E. Arms, P. Ryan, and E. T. Young Supplementary Tables Supplementary Table S1: Oligonucleotides Name Sequence Target Reference KB2-GAL1.r1 ACGCTTAACTGCTCATTGCT GAL1-10p (Bryant and Ptashne, KB3-GAL7.f1 TTTTTCCCCTTTATTTTGTTCA GAL7p (Bryant and Ptashne, KB4-GAL7.r1 GCTCAACAGTGCTCCGAAGT GAL7p (Bryant and Ptashne, KB7-GAL2.f1 CCATGTGCCTTGGACGATAT GAL2p KB8-GAL2.r1 CCATTTGCTCCCCATCTTGA GAL2p ADH2.Q1 ACCATCCACTTCACGAGACTGA ADH2p (3) ADH2.L AAAAGTCGCTACTGGCACTC ADH2p (3) tel.55 GCGTAACAAAGCCATAATGCCTCC telomere (3) tel.56 CTCGTTAGGATCACGTTCGAATCC telomere (3) KB9-GAL1.f2 CGTTCATCAAGGCACCAAAT GAL1 (Bryant and Ptashne, KB10-GAL1.r2 TCAGAGGGCTAAGCATGTGT GAL1 (Bryant and Ptashne, KB11-GAL10.f1 ACGGAGATTATGGTGCGTTC GAL10 (Bryant and Ptashne, KB12-GAL10.r1 AATCAAACTGGGGATTTTTGG GAL10 (Bryant and Ptashne, KB13-GAL7.f2 GGACCTCGCCTCGATTTTA GAL7 (Bryant and Ptashne, KB14-GAL7.r2 AATTCATCACCAGTCGCATTC GAL7 (Bryant and Ptashne,
2 KB15-ACT1.f2 TTCCCAGGTATTGCCGAAAG ACT1 KB16-ACT1.r2 CCAATCCAGACGGAGTACTTTC ACT1 KB18-GAL2.r2 CAACCAAACAGCCCATGAAG GAL2 KB19.GAL10p.f GCTCGGCGGCTTCTAATC phz18' 2 (UASg- CYC1p) KB20.CYC1p.r1 TGCTGCAAAGGTCCTAATGTATAAG phz18' (UASg- CYC1p) -1F CCAAAAAAAGAGATCGAATTCCAGAT GGCTAACGTAGAAAAACC -20F CCAAAAAAAGAGATCGAATTCCAGTC GTGCTTTTCTAACGGCTT -148F CCAAAAAAAGAGATCGAATTCCAGAT CAGGCATGCTCAAAAAAT -154F CCAAAAAAAGAGATCGAATTCCAGAT CCATAGTGGTAATTTAGG -468F CCAAAAAAAGAGATCGAATTCCAGTC CCATTTGAACCTATCAAA -160R TCACCCTAAATTACCACTATGGA -220R TCACTTACGTTTAACATTAGCTT -304R TCATATAATCCAAATTCATTGTT -424R TCAATCGACGAAATCAGGTTGGT -1323R TCAACTGTTTCCCTTTAGATGAT -215F CCAAAAAAAGAGATCGAATTCCAGGC TAATGTTAAACGTAAGTACTTG -255F CCAAAAAAAGAGATCGAATTCCAGGT
3 TAAATTTTCTACGCCTGAATTA -280F CCAAAAAAAGAGATCGAATTCCAGAT GAATCTAGATTTAAACCTAAAT -355F CCAAAAAAAGAGATCGAATTCCAGAA AGCCTATAATGATCATTTGTTT -305F CCAAAAAAAGAGATCGAATTCCAGAC AATGAATTTGGATTATAAATTG -260R TCAAGGCGTAGAAAATTTAACAC -310R TCAATAATCCAAATTCATTGTTG -360R TCAATGATCATTATAGGCTTTTA -420R TCAAGGTTGGTTGTCTGATACCT -240F CCAAAAAAAGAGATCGAATTCCAGTT GCCCGACCAATCTTCGCT -280R TCACATATTCAGGTCAAACGAAG -300R TCAATCAGAACGGTTTAATGCTA
4 Supplementary Table S2. Plasmids.
5 Supplementary Table S3. Sequence identities in Adr1 orthologs of Ascomycetes. Adr1 orthologs Gene Species SeqLen % Identity % Similarity Adr1 S. cerevisiae S. bayanus E09922g K. thermotolerans K. waltii H12958g S. kluyveri K. polysporus A09416g Z. rouxii AGR172W A. gossypii S. castellii E04884g C. glabrata F13046g K. lactis Mxr1 P. pastoris Rsf2 orthologs Rsf2 S. cerevisiae YML081W S. cerevisiae S. bayanus B14894g Z. rouxii B04477g K. lactis AER159C A. gossypii D18062g K. thermotolerans K. waltii G18062g S. kluyveri H04213g C. glabrata S. castellii K. polysporus S. castellii Bryant, G.O. and Ptashne, M. (. Mol. Cell 11, Dombek, K. M., S. Camier, and E. T. Young ADH2 expression is repressed by REG1 independently of mutations that alter the phosphorylation of the yeast transcription factor. Mol Cell Biol 13: Dombek, K. M., and E. T. Young Cyclic AMP-dependent protein kinase inhibits ADH2 expression in part by decreasing expression of the transcription factor gene. Mol Cell Biol 17: Beier, D. R., and E. T. Young Characterization of a regulatory region upstream of the ADR2 locus of S. cerevisiae. Nature 300: Bertram, PG., Zeng, C., Thorson, J., Shaw, AS. and Zheng, XFS. (1998). The proteins positively regulate rapamycin-sensitive signaling. Current Biology. 8: 1259.
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