Exploratory data analysis description, 96 dotplots, 101 stem-and-leaf, ez package, ezanova function, 132

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1 Index A Akaike Information Criterion (AIC), 78 Associations problem, 226 solution, 226 analysis, 226 apriori function, 228 basket analysis, 226 CSV version of our basket dataset(), 230 inspect(), 229 opening CSV file in Rattle(), 231 Rattle GUI(), 230 Rattle summary of association rule analysis, 232 rule analysis, 226 as.table() function, 68, B Bar charts, Binomial probability distribution characteristics, 109 commercial airliner, jet engines, 110 complement rule, 110 dbinom() function, 109 description, 109 PMF, 109 Bootstrapping method, 160 Boxplots coefficient of determination, 98 description, 96 National Science Foundation, 98 outliers, side-by-side, 97 brkdn() function, 84 C calculate.xtab() function, 86 Character strings cat() function, 61 c() function, 61 concatenating, 62 description, 60 digital universe, 60 EMC s seventh digital universe study, 60 exabyte, 60 Internet of things (IoT), 60 package, paste(), 61 paste() function, 62 patterns and matches, single/double quotes, 61 space, 61 sprintf() function, 62 Chi-square distribution, Chi-square test, 72 Clusters of individuals or objects problem, 221 solution, 222 dendrogram, 222 hierarchical clustering dendrogram, 223 updated dendrogram, 224 Compiled code and preallocation C++ code, 211 definitional formula, 213 Fibonacci sequence, 212 loops, 214 microbenchmark package, 212 R code, 213 Rcpp package, 211 speed of processing,

2 index Constant expected return (CER) model, 195 Contemporary statistical methods hypothesis testing, 157 permutation tests, probabilities, 157 resampling techniques, standard t test, 160 trimmed means, calculation (see Trimmed means, Welch t test) Correlation coefficient binary logistic regression, 149 point-biserial correlation, predicted values for promotion, 149 product-moment correlation, 148 cut() function, 81 D Data frame, 79 Datasets, 201 cbind() function, 48 compiled code and preallocation, data.frame() function, 48 data tables, Excel template, 54 merging datasets, numeric variables, 54 parallel R, rbind() functions, 48 reshaping datasets, R functions, 52 rnorm() function, 48 stack() function, 53 t.test() function, 52, 55 unstack() function, 54 variable names, 49 Data structures, R data frames creating and accessing elements, missing data, saving datasets, 41 subsetting data, 40 lists (see Lists) matrices, vectors elementwise, 28 R Console or Editor, 27 replicate function rep(), 29 sequence function seq(), 29 Data tables columns, 211 comparison operators, 209 creation, 207 GSS data, 208 Hmisc package, 208 retrieved information, 210 row names, 208 rows of data, 209 traditional data frame, 207 Data visualization, Dates and times arithmetic, 58 as.integer() function, 59 as.numeric() function, 58 calculations, 59 code value, 58 default format, 57 POSIXct objects, 59 POSIXlt object, 59 PSOSIXct format, 57 R format codes, various date values, 58 Sys.Date() function, 57 Sys.time() function, 57 unclass() function, weekdays() and months() functions, 58 Dimensionality of data, reducing problem, 217 solution, 217 communalities, 217 eigenvalues and eigenvectors, 219 factors, 217 rotated three-component solution, structural diagram, 221 R package psych, 218 Dotplots, 101 E Exploratory data analysis description, 96 dotplots, 101 stem-and-leaf, ez package, ezanova function, 132 F Financial data chartseries function, 187 daily trading volume, 184 Internet, 183 Netflix stock prices, quantmod package, 183 stock returns (see Stock returns analysis) 238

3 Index G ggplot2 package attributes, geographical location, 102 dotplots, 101 grammar of graphics, 89 Grouped frequency distributions problem, 81 solution, 81 H Histograms, Hypothesis tests nominal data, 117 nonparametric, 117 one-sample tests (see One-sample tests) two-sample tests (see Two-sample tests) Hypothetical Airbag Data, 131 Hypothetical opinion poll, 122 I, J, K IDEs. See Integrated development environments (IDEs) IDRE. See Institute for Digital Research and Education (IDRE) Input and output (I/O) data, R program cleaning data CAG, 21 CSV files, 21 Data Editor, plyr package, 21 R GUI, Internet, keyboard and monitor access, R console, 17 reading data files, R graphics device, 17 text data, writing data files, 20 Institute for Digital Research and Education (IDRE), Integrated development environments (IDEs), 4 Interaction plot, 138 L Line graphs, Lists adding and deleting components, creation, lapply() and sapply() functions, 36 M Mann-Whitney test, 130 Mann-Whitney U test, 128 McNemar test description, 123 hypothetical data, 127 table layout, 127 Measurement error model, 195 Merging datasets data frames, 43, 46 demographic.csv, 46 merge() function, 43 NULL, 46 order() function, 45 read.csv() function, 46 sex and age variables, 45 studentid, 45 Message passing interface (MRI), 202 Migrating to R assignment operator, 5 comparison operators, 8 9 comprehensive R archive network, 1 2 data structures (see Data structures, R) data types handling missing data, 10 matrices, vectors, IDEs, 4 interface, 4 I/O data (see Input and output (I/O) data, R program) linux system, 3 4 logical operators, 9 multiple lines of code, 7 numbers, 6 operator, functions and constants, 8 R GUI, 2 3 vectorized operation, 6 workspace image, 5 Mining gold, data and text associations, clusters of individuals or objects, , 225 mining text, rattle package running under R 3.1.2, 216 reducing data dimensionality, 217, statistics, 215 Mining text clouds, 235 problem, 233 solution, 233 tm package, 233 word cloud developed from corpus,

4 index mode() function, 81 Modern portfolio theory (MPT) computational finance, 198 constituent assets, 196 description, 196 global minimum variance portfolio, 199 Multiple regression academic and motivational variables, confidence interval, interpretation, 155 lm() function, 153, 155 multiple linear regression model, 152 predictors, 154 regression coefficients, 152 MyPieLife, 61 N Nominal and ordinal data, O One-sample tests description, 117 for means, nominal and ordinal data (see Nominal and ordinal data) One-way tests, Oscars, 79 P Parallel R clusters, 206 doparallel package, 204 dosnow package works, 207 embarrassingly parallel\perfectly parallel processing, 201 master processor, 201 message passing interface (MRI), 202 parallel computing, 202 proof of concept, 204 purposes, 206 quad-core processor, 205 snow package, 203 standard network name, toy example, 205 vectorized operations and functions, 205 Pearson s product-moment correlation, 145, 148, 150, 152 Permutation tests, phi coefficient and chi-square, 150 description, 146, 150 Pearson s product-moment correlation, 150 with Spearman s Rho, 151 Pie chart representation argument col = FALSE, 90 copy, save and print graphics, 91 description, 90 graphical representations, 90 par() function, 90 Plastic Omnium s environmental policy, 24 PMF. See Probability mass function (PMF) Poisson probabilities characteristics, 110 description, 110 probabilities of events, 111 prettyr, Probability mass function (PMF), 109 p values, 112 p values for F distribution, Q Quantiles problem, 87 solution, R Rattle package running under R 3.1.2, 216 Relationship between variables correlation coefficient, multiple regression, scale variables, correlation, Spearman s rank correlation, the phi coefficient, 150 Repeated-measures designs, Resampling techniques, traditional hypothesis testing bootstrapping method, 160 histogram, medians, 159 hypothetical scores, sample medians, distribution, 158 Reshaping datasets longscores dataset, 51 measurement, 50 reshape() function, 50 timevar argument, 51 Reusable functions writing arguments, 167 BMI function, BSDA package, 174 cover all outcomes approach, 171 description, 167 environment, 167 fbasics,

5 Index histogram, 172 input and output, 167 interface script, 178 length() function, 170 median, 168 null hypothesis, 169 return() statement, 175 Run App, 179 sample means, 173 scale function, 173 server script, 177 Shiny application, 180 Shiny apps, 179, 181 source code, 168 squarex, 175 take.root, 175 two-sided hypothesis test, 170 user interface script, 177 web-based server, 177 z.test function, 169 S Scale variables brain volume and intelligence, 143 correlation coefficient, 143 covariance, 144 heights and weights, measurement, scalelessness property, 144 slope coefficient, 146 Scatterplot description, 99 ggplot2, 95 of Starbucks volume by date, 96 with line of best fit added, 100 Scheirer-Ray-Hare (SRH) test, 138 Side-by-side boxplots, 97 Simple frequency distributions problem, 79 solution, Skewed, 82 Spearman s rank correlation, 151 SPSS output, 87 Standard graphs bar charts, histograms, line graphs, scatterplots (see Scatterplot) Tufte s principles, 92 Standard normal curves, Statistical functions problem, 81 solution, Stem-and-leaf plots, Stock returns analysis growth pattern, 189 investment decisions, 187 Netflix stock, Stocks comparison CumReturns function, Netflix stocks, 192 PerformanceAnalytics, R packages, 192 stringr package advantages, 63 description, 63 extracting words, 66 install.packages() function, 63 padding, 65 str_c() function, 64 str_dup() function, 64 str_length() function, 64 str_sub() function, 64 trim strings, 66 wrapping, T, U, V Tables description, 67 HairEyeColor data, 67 one-and two-way tables analyzing problem, 72 solution, working with higher-order problem, solution, working with one-way problem, 68 solution, working with two-way problem, 69 solution, t distribution, Trimmed means, Welch t test memory-enhancing supplement, 162 memory scores, groups, Mann-Whitney U test, 165 variance, calculation, 161 Wilcox s WRS package, 161 Winsorizing, 160 Yuen s robust t test, Two-sample tests cbind() function, 124 chi-square with 1 degree of freedom,

6 index Two-sample tests (cont.) histograms, word recognition data, hypothetical airbag data, 131 independent-samples t test, 123 McNemar test, 123, 127 paired-samples t test, 124 parametric tests, 128 pooled-variance t test, 130 z.test function, Two-way tests, W, X Welch t test, , 164 Wilcoxon signed rank test, 123 wilcox.test function, 130 Winsorizing, 160 Y, Z Yuen s robust t test,