Performance Analysis with Vampir
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1 Performance Analysis with Vampir Bert Wesarg Technische Universität Dresden
2 Outline Part I: Welcome to the Vampir Tool Suite Mission Event trace visualization Vampir & VampirServer The Vampir displays Part II: Vampir hands-on Visualizing and analyzing NPB-MZ-MPI / BT 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 2
3 Event trace visualization with Vampir Alternative and supplement to automatic analysis Show dynamic run-time behavior graphically at any level of detail Provide statistics and performance metrics Timeline charts Show application activities and communication along a time axis Summary charts Provide quantitative results for the currently selected time interval 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 3
4 Visualization modes (1) Directly on front end or local machine % vampir Core Core Core Core Multi-Core Program Core Core Core Core Score-P Trace File Vampir Small/Medium sized trace Thread parallel 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 4
5 Visualization Modes (2) On local machine with remote VampirServer % vampirserver start % vampir VampirServer Vampir CPU CPU CPU CPU CPU CPU CPU CPU Core Core Core Core LAN/WAN CPU CPU CPU CPU CPU CPU CPU CPU Core Core Core Core Many-Core CPU CPU CPU CPU CPU CPU Program CPU CPU Core Core Core Core Score-P Trace File Large trace file (stays on remote machine) CPU CPU CPU CPU CPU CPU CPU CPU Core Core Core Core Parallel application 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 5
6 The main displays of Vampir Timeline Charts: Master Timeline Process Timeline Counter Data Timeline Performance Radar Summary Charts: Function Summary Message Summary Process Summary Communication Matrix View 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 6
7 Hands-on: Visualizing and analyzing NPB-MZ-MPI / BT
8 Start Vampir % vampirserver start Launching VampirServer... Submitting slurm 45 minutes job (this might take a while)... salloc: Granted job allocation VampirServer (r9950) Licensed to VI-HPS Tools Workshop 04/2016 Running 4 analysis processes... (abort with vampirserver stop \ > 14457) VampirServer <14457> listens on: uv2:30009 vampir % ssh -YAC scorep_bt-mz_w_4x4_trace/traces.otf2 lxlogin1.lrz.de l <login> % source ~lu23bim/lrz-vihpstw21/tools/source-me.scorep mpt.sh % vampir Remember host and port Remember host and port Start the Vampir GUI on the login node or on your local machine 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 8
9 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 9
10 Use the Open Other option 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 10
11 Select Remote File 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 11
12 Server is uv2 Port is Connection type Socket 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 12
13 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 13
14 Serial exercises Extract exercise traces: % cd ~ % tar xf ~lu23bud/lrz-vihpstw21/vampir/scorep_bt_c_traces.tar.xz Open ~/scorep_bt_c_serial_trace/traces.otf2 in Vampir 1. What are the functions with the longest running time in total? 1. Color the top 3 with different colors 2. Which function called these functions? 3. How often is this function called? 4. What is the average call time of this function? 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 14
15 OpenMP exercises Open ~/scorep_bt_c_omp_4_trace/traces.otf2 in Vampir 1. Total time spent in all OpenMP barriers? 1. How much in the barriers from the {x,y,z}_solve parallel regions 2. Which thread spends the most time in these barriers? 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 15
16 MPI exercises Open ~/scorep_bt_c_mpi_16_trace/traces.otf2 in Vampir 1. Find MPI_Init 2. How many nodes did the job used? 3. Total wait time in MPI functions? 4. Communication pattern and cliques? 5. Any MPI collectives used? 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 16
17 BT-MZ-MPI Trace Open scorep_bt-mz_4x4_trace/traces.otf2 in Vampir 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 17
18 Visualization of the NPB-MZ-MPI / BT trace Navigation Toolbar Function Summary Master Timeline Function Legend 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 18
19 Visualization of the NPB-MZ-MPI / BT trace Master Timeline Detailed information about functions, communication and synchronization events for collection of processes. 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 19
20 Visualization of the NPB-MZ-MPI / BT trace Process Timeline Detailed information about different levels of function calls in a stacked bar chart for an individual process. 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 20
21 Visualization of the NPB-MZ-MPI / BT trace Typical program phases Initialisation Phase Computation Phase 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 21
22 Visualization of the NPB-MZ-MPI / BT trace Counter Data Timeline Detailed counter information over time for an individual process. 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 22
23 Visualization of the NPB-MZ-MPI / BT trace Performance Radar Detailed counter information over time for a collection of processes. 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 23
24 Visualization of the NPB-MZ-MPI / BT trace Zoom in: Inititialisation Phase Context View: Detailed information about function initialize_. 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 24
25 Visualization of the NPB-MZ-MPI / BT trace Find Function Execution of function initialize_ results in higher page fault rates. 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 25
26 Visualization of the NPB-MZ-MPI / BT trace Computation Phase Computation phase results in higher floating point operations. 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 26
27 Visualization of the NPB-MZ-MPI / BT trace Zoom in: Computation Phase MPI communication results in lower floating point operations. 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 27
28 Visualization of the NPB-MZ-MPI / BT trace Zoom in: Finalisation Phase Early reduce bottleneck. 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 28
29 Visualization of the NPB-MZ-MPI / BT trace Process Summary Function Summary: Overview of the accumulated information across all functions and for a collection of processes. Process Summary: Overview of the accumulated information across all functions and for every process independently. 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 29
30 Visualization of the NPB-MZ-MPI / BT trace Process Summary Find groups of similar processes and threads by using summarized function information. 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 30
31 Trace Comparison: Time spent in OpenMP barriers Improved runtime Less time in OpenMP barrier 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 31
32 Trace Comparison: Computational imbalance Great imbalance for Great imbalance for time time spent in spent in computational code computational code 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 32
33 Summary and Conclusion VIRTUAL INSTITUTE HIGH PRODUCTIVITY SUPERCOMPUTING
34 Summary Vampir & VampirServer Interactive trace visualization and analysis Intuitive browsing and zooming Scalable to large trace data sizes (20 TiB) Scalable to high parallelism (200,000 processes) Vampir is available for Linux, Windows, and Mac OS X 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 34
35 Vampir is available at Get support via 21ST VI-HPS TUNING WORKSHOP (LRZ, GARCHING, APR 2016) 35
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